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Pubmed Syntax

See pubmed plugin.

This is a plugin for DokuWiki that retrieves the information from PubMed with PMID. The plugin stores NCBI ESummary XML file /data/media/ncbi_esummary directory.

{{pubmed>[Command]:[PubMed ID]}}

Command item function
short link Show a short pubmed link from NCBI Structure database
long link Show a detailed pubmed link from NCBI Structure database
summaryXML xml Show a XML summary data from the NCBI database using Entrez Utilities
clear_summary - Clear cached XML files in /data/media/ncbi_esummary

Examples

short

code

{{pubmed>short:9039911}}

Display

Wilmut Iet al.Nature385p810-3(1997 Feb 27)

long

code

{{pubmed>long:9039911}}

Display

Viable offspring derived from fetal and adult mammalian cells.
Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH,Nature385p810-3(1997 Feb 27)

summaryXML

code

{{pubmed>summaryXML:9039911}}

Display

<?xml version="1.0"?>
<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 29 October 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
<eSummaryResult>
<DocSum>
	<Id>9039911</Id>
	<Item Name="PubDate" Type="Date">1997 Feb 27</Item>
	<Item Name="EPubDate" Type="Date"></Item>
	<Item Name="Source" Type="String">Nature</Item>
	<Item Name="AuthorList" Type="List">
		<Item Name="Author" Type="String">Wilmut I</Item>
		<Item Name="Author" Type="String">Schnieke AE</Item>
		<Item Name="Author" Type="String">McWhir J</Item>
		<Item Name="Author" Type="String">Kind AJ</Item>
		<Item Name="Author" Type="String">Campbell KH</Item>
	</Item>

.....

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